Members
Clearing cells of age-related wastes
Project Description
To restore youthful function to cells failing in many age-related diseases, we need to purge them of stubborn wastes that accumulate during biological aging. At Rice University, SENS Foundation is funding research to identify, test, and improve the function of natural enzymes in the environment capable of degrading specific wastes, so that we can harness them to give the same ability into our cells.
Healthy cell function depends on having a working waste disposal system called the lysosome, to break down damaged and outmoded molecules and salvage their valuable components for recycling. The accumulation of damaged molecules too stubborn for the lysosome to handle causes and is caused by the gradual failure of this system to keep up with the daily burden such wastes, and this failure is a major cause of many of the crippling diseases of aging.
SENS Foundation is funding research to equip our cells with powerful new enzymatic cleaners to break down these stubborn wastes, unclog the waste disposal units, and rejuvenate cell function. One team is centered at our in-house SENS Research Center in the Bay area; the other team, funded by SENS Foundation donors, is at Rice University, headed up by bioremediation specialist Dr. Pedro Alvarez at the Center for Civil and Environmental Engineering at Rice University.
The Rice University group has discovered that the common soil bacterium Rhodococcus jostii RHA1 is able to break down 7-ketocholesterol, a critical waste product that paralyzes immune cells tasked with protecting the arteries, leading to atherosclerosis. Grad student Jacques Mathieu is now identifying and testing the abilities of the specific enzymes that let the bacteria break down this waste, scanning the genome of the organism (in collaboration with researchers at the University of British Columbia, Canada) for the genes that encode it, and putting evolutionary forces to work in colonies of the bacteria to make them even better at doing the job.
Meanwhile, fellow Rice researcher Rob O'Callahan is working to isolate a different form of age-related waste (lipofuscin) that is widespread in the cells of aging heart and brain cells, to see if enzymes identified at Rice and at the RC may also be able to break down this cell-clogging material.
When successful, SENS Foundation will then fund further work to upgrade our own cellular incinerators with versions of these enzymes modified to do the same job in our cells that they do for these bacteria.
Project News & Updates
Proving the Principle
Submitted by Rob OCallahan on August 4, 2010 - 12:56amI am working on a new experiment with nonspecific peroxidase enzymes and ALE-modified proteins. I am reacting BSA with malondialdehyde (MDA) to modify it with fluorescent crosslinks, which I can measure using ELISA. I will then react common, non-specific enzymes like horseradish peroxidase (HRP) with the modified BSA and measure if any of the crosslink was degraded. If I can show that an enzyme like HRP is able to access ALE modifications on a protein surface, this would show some promise for using enzymes to degrade damaged proteins in vivo.
LysoSENS Progress and Prospects
Submitted by Jacques Mathieu on August 3, 2010 - 2:49amThe 7KC-degrading bacterium I’ve been studying, Rhodococcus jostii RHA1, has two large gene clusters that are up-regulated by 7KC, but not cholesterol. In these two gene clusters lie a number of enzymes we believe are involved in 7KC degradation, including an enzyme that could reduce the 7-keto group to a hydroxyl. What makes this interesting to us is that while 7KC is highly cytotoxic, 7α-hydroxycholesterol (7αOH) is relatively harmless. So I am now methodically going through suspected candidates, searching for reductase activity against 7KC.
Introducing Jacques
Submitted by Jacques Mathieu on March 16, 2010 - 2:00pmIt was early 2005 when I first read about SENS. I had already applied to several graduate schools at that time and was waiting to hear back, but as I delved into that article in Popular Science I knew this was something I wanted to be involved in. A lot of people were studying aging, but no one had a plan like this. I emailed Aubrey and it wasn't long before I was headed to Rice University in Houston; first to perform some preliminary research into the LysoSENS project, and then to begin a PhD studying microbial oxysterol degradation.







